After looking in to a question I've not heard of before I think its going to be difficult to determine when the change over took place at each plant. What is required is pictures of observations of the AC/heater case from the firewall side and/or clear pictures from a good angle of allot of passenger firewalls.
Looking through my pictures I could only find one that had the outer opening trim removed allowing a pretty clear view of the attachment points and seal on the case
69 Dearborn Mustang built likely the first half of May 1969 with the "late" version. Have the tubes orientation vertical from one another.
Set of pictures showing the AC line attachment points being vertical from one another. Possibly the "earlier" version
Examples from 69 Dearborn built 4/2/69, 9F16089x, 9t19666x 9f13488x
A set of pictures showing the attachment hoses at an angle that appear to match the first picture orientation of the tube ends at the case.
Examples from 9R11107x, 9R14025x, 9R11446x, 9R11485x
Drawing no conclusions at this time. Just offering examples for discussion and observation