Jeff,
In order to begin a build sheet decoding process, I've had to start with an understanding of what components (and part numbers) were utilized under what circumstances. A 1966 6-cylinder driveshaft, for instance, could have been one of three different parts - depending upon which transmission it bridged to the rear end. So far, I've found two different codes, one for the 3-speed and one for the C-4 driveshafts. I suspect I'll find a third code when I stumble across a Dagenham build sheet. Regardless of the paint markings found from a particular plant, which seems to be a very contentious subject, the part would still have to be the correct service rating (length and diameter of a driveshaft/transmission combination, or weight service rating for the front springs of a K-code with a C-4 and thermactor). The 1965-72 Parts Manual has been a great aid in determining these different parts. As you note (and I've found out) the Parts Manual is not a complete compilation.
And then there's the "real world" differences, where I'm sure I'll find instances where a build sheet might call for the code of, for instance, a 3-speed manual transmission, and a Falcon or Fairlane part was utilized. When I get to that build sheet I'd be curious to see whether the transmission code changes as well.
If there is a more accurate (complete) reference I can used instead of the parts manual, perhaps you can direct me to it?