Lay the new harness out. I put a blanket on my hood with the new harness going where it would wind up. That's to get twists and bends out. Use the 66 Mustang Electrical Assembly Manual a lot. Remove the heater, the glove box, ash tray, radio, speakers, console, and seats. Have in place the windshield wiper motor, courtesy lights, LH vent, pedals.
I used a coat hanger to pull wired across, twist ties to hold sections in place. Blue painters tape might work too.
Jim