The bolts are probably the same as my 66 Hardtop and 66 K Fastback both built mid October in San Jose: SEMS with two semi-circles around the SEMS, toothed dish, 378156-S2, 5/16-18X7/8 for most of the under hood bolts, fender, hood, etc - (difficult to get a total as some Shelby's did not use all the regular Mustang stuff); and the type with the head marking I call "Double Ditto", 378178-S2, 5/16-18X1.0, for the shields around the springs (officially called "Bracket, Upper A-Arm Bumper), 16 total.
Jim